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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13901 and 13902 are separated by 197 nucleotides
13902 and 13903 are separated by 364 nucleotides
13903 and 13904 are separated by 251 nucleotides
13904 and 13905 are separated by 134 nucleotides
mRNA_5533: 13901 - Hypothetical Protein, at 314,025 to 315,738
13901
mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315,936 to 317,983
13902
mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318,348 to 322,384
13903
mRNA_5536: 13904 - Hypothetical Protein, at 322,636 to 323,526
13904
mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323,661 to 327,159
13905
Group
Condition
mRNA
_5533
mRNA
_5534
mRNA
_5535
mRNA
_5536
mRNA
_5537
13901
13902
13903
13904
13905
growth on oleic acid
YNB Oleic Acid
-0.5
-1.2
+0.3
-0.7
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-1.2
-0.2
+0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.1
+0.3
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.6
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
+0.5
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.3
-0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.3
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.4
+0.9
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
-0.6
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
+0.3
-0.5
N.D.
growth on ypd
YPD
-0.5
-0.5
+0.3
+0.8
N.D.
auxotrophy
YNB Glucose
+0.3
+0.2
+0.3
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.7
-0.2
-0.9
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.1
+0.5
N.D.
auxotrophy
Dropout Complete
-0.2
+0.6
+0.6
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.6
+0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.2
+0.3
+1.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.3
+0.2
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.3
+0.3
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
+0.2
+1.1
N.D.
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