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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13902 and 13903 are separated by 364 nucleotides
13903 and 13904 are separated by 251 nucleotides
13904 and 13905 are separated by 134 nucleotides
13905 and 13906 are separated by 292 nucleotides
mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315,936 to 317,983
13902
mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318,348 to 322,384
13903
mRNA_5536: 13904 - Hypothetical Protein, at 322,636 to 323,526
13904
mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323,661 to 327,159
13905
mRNA_5538: 13906 - Hypothetical Protein, at 327,452 to 328,556
13906
Group
Condition
mRNA
_5534
mRNA
_5535
mRNA
_5536
mRNA
_5537
mRNA
_5538
13902
13903
13904
13905
13906
growth on oleic acid
YNB Oleic Acid
-1.2
+0.3
-0.7
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.1
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.6
+0.0
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
-0.4
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.5
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.2
-0.9
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
-0.6
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.5
N.D.
-0.3
growth on ypd
YPD
-0.5
+0.3
+0.8
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.9
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
+0.2
+0.3
-0.6
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-0.5
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.3
-0.5
N.D.
+0.3
auxotrophy
Dropout Complete
+0.6
+0.6
-0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
+1.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
+1.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.8
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+1.5
N.D.
-0.1
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