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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13906 and 13907 are separated by 299 nucleotides
13907 and 13908 are separated by 723 nucleotides
13908 and 13909 are separated by 404 nucleotides
13909 and 13910 are separated by 176 nucleotides
mRNA_5538: 13906 - Hypothetical Protein, at 327,452 to 328,556
13906
mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328,856 to 330,220
13907
mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330,944 to 333,027
13908
mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333,432 to 336,799
13909
mRNA_5542: 13910 - Hypothetical Protein, at 336,976 to 338,321
13910
Group
Condition
mRNA
_5538
mRNA
_5539
mRNA
_5540
mRNA
_5541
mRNA
_5542
13906
13907
13908
13909
13910
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.4
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.1
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.2
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.7
-0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
+0.9
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.4
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
+0.7
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+1.0
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.5
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+1.1
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.4
+0.4
-0.1
+0.1
auxotrophy
YNB Glucose
+0.5
+0.0
+0.7
+0.1
-0.1
growth on ypd
YPD
-0.3
-0.1
+0.7
+0.5
+0.5
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
+1.1
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+1.7
-0.2
+0.1
auxotrophy
Dropout Complete
+0.3
+0.2
+0.8
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
+2.0
-0.1
+0.1
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