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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13909 and 13910 are separated by 176 nucleotides
13910 and 13911 are separated by 315 nucleotides
13911 and 13912 are separated by 640 nucleotides
13912 and 13913 are separated by 1199 nucleotides
mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333,432 to 336,799
13909
mRNA_5542: 13910 - Hypothetical Protein, at 336,976 to 338,321
13910
mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338,637 to 339,590
13911
mRNA_5544: 13912 - Hypothetical Protein, at 340,231 to 341,133
13912
mRNA_5545: 13913 - Hypothetical Protein, at 342,333 to 343,433
13913
Group
Condition
mRNA
_5541
mRNA
_5542
mRNA
_5543
mRNA
_5544
mRNA
_5545
13909
13910
13911
13912
13913
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.0
+1.1
-2.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
-0.8
-0.0
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.7
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.0
-0.0
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.1
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
+0.8
-0.8
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.7
-0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
+0.2
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.2
-0.5
+0.2
auxotrophy
YNB Glucose
+0.1
-0.1
-0.4
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.1
+0.4
+0.0
auxotrophy
Dropout Complete
-0.0
+0.4
-0.7
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
+1.5
-0.1
-0.2
growth on ypd
YPD
+0.5
+0.5
-0.9
-0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.4
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
+0.8
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
+1.6
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+1.5
-0.2
+0.4
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