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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13912 and 13913 are separated by 1199 nucleotides
13913 and 13914 are separated by 134 nucleotides
13914 and 13915 are separated by 266 nucleotides
13915 and 13916 are separated by 437 nucleotides
mRNA_5544: 13912 - Hypothetical Protein, at 340,231 to 341,133
13912
mRNA_5545: 13913 - Hypothetical Protein, at 342,333 to 343,433
13913
mRNA_5546: 13914 - Hypothetical Protein, at 343,568 to 344,161
13914
mRNA_5547: 13915 - K08994 yneE putative membrane protein, at 344,428 to 346,193
13915
mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346,631 to 348,391
13916
Group
Condition
mRNA
_5544
mRNA
_5545
mRNA
_5546
mRNA
_5547
mRNA
_5548
13912
13913
13914
13915
13916
ypd buoyancy
40 hrs No Buoyancy Separation
-2.3
-0.4
+0.5
-1.0
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.2
-0.4
-0.1
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
-0.2
+0.7
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.6
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
-0.4
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.2
+0.0
-0.2
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.3
-0.2
-0.4
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.2
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.4
-0.2
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.5
+0.2
-0.1
-0.5
+0.9
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.3
-0.2
+1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.0
-0.1
-0.4
+1.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-0.2
-0.3
+1.3
growth on ypd
YPD
-0.2
+0.6
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.3
-0.3
+1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.3
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
+0.1
+0.0
+0.7
auxotrophy
Dropout Complete
+0.3
+0.4
-0.5
-0.3
+1.1
auxotrophy
YNB Glucose
+0.2
+0.4
-0.3
-0.3
+1.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
+0.2
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.4
+0.1
-0.2
+2.1
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