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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13915 and 13916 are separated by 437 nucleotides
13916 and 13917 are separated by 804 nucleotides
13917 and 13918 are separated by 1411 nucleotides
13918 and 13919 are separated by 343 nucleotides
mRNA_5547: 13915 - K08994 yneE putative membrane protein, at 344,428 to 346,193
13915
mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346,631 to 348,391
13916
mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349,196 to 351,953
13917
mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353,365 to 355,997
13918
mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356,341 to 358,990
13919
Group
Condition
mRNA
_5547
mRNA
_5548
mRNA
_5549
mRNA
_5550
mRNA
_5551
13915
13916
13917
13918
13919
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
-0.4
-2.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-1.1
+0.3
-1.3
-0.5
growth on ypd
YPD
+0.1
+0.1
-0.1
-2.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.9
-0.5
-1.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.2
-1.8
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
-0.2
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
+0.0
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.4
-0.2
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
-0.2
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.6
+0.3
-1.0
-0.1
growth on oleic acid
YNB Glucose
-0.4
+0.5
-0.2
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
-0.5
+0.9
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
+0.8
-0.2
auxotrophy
Dropout Complete
-0.3
+1.1
+0.5
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.7
+0.2
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+1.2
+0.5
-0.3
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+1.2
-0.2
+0.9
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+1.3
+0.4
+0.2
+0.4
auxotrophy
YNB Glucose
-0.3
+1.2
+0.3
+0.9
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+1.6
-0.0
+1.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+2.1
+0.2
+0.9
+0.2
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