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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13916 and 13917 are separated by 804 nucleotides
13917 and 13918 are separated by 1411 nucleotides
13918 and 13919 are separated by 343 nucleotides
13919 and 13920 are separated by 872 nucleotides
mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346,631 to 348,391
13916
mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349,196 to 351,953
13917
mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353,365 to 355,997
13918
mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356,341 to 358,990
13919
mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359,863 to 362,993
13920
Group
Condition
mRNA
_5548
mRNA
_5549
mRNA
_5550
mRNA
_5551
mRNA
_5552
13916
13917
13918
13919
13920
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.4
-2.0
-0.4
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.3
-1.3
-0.5
-1.4
growth on ypd
YPD
+0.1
-0.1
-2.5
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
-1.8
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.5
-1.1
-0.1
+1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.8
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.0
-0.6
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
-0.2
+0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.3
-1.0
-0.1
-0.3
auxotrophy
Dropout Complete
+1.1
+0.5
-0.2
+0.2
-1.6
growth on oleic acid
YNB Glucose
+0.5
-0.2
+0.4
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.2
+0.5
+0.1
-0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.8
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.9
-0.1
-0.0
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.2
+0.5
-0.3
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+1.3
+0.4
+0.2
+0.4
-0.8
growth on oleic acid
YNB Oleic Acid
+1.2
-0.2
+0.9
+0.1
-0.5
auxotrophy
YNB Glucose
+1.2
+0.3
+0.9
+0.2
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.3
-0.3
+1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.1
+0.2
+0.9
+0.2
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.6
-0.0
+1.3
+0.3
-0.7
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