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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13918 and 13919 are separated by 343 nucleotides
13919 and 13920 are separated by 872 nucleotides
13920 and 13921 are separated by 201 nucleotides
13921 and 13922 are separated by 602 nucleotides
mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353,365 to 355,997
13918
mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356,341 to 358,990
13919
mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359,863 to 362,993
13920
mRNA_5553: 13921 - K20791 NAA10_11, ARD1_2 N-alpha-acetyltransferase 10/11, at 363,195 to 364,083
13921
mRNA_5554: 13922 - KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily, at 364,686 to 369,253
13922
Group
Condition
mRNA
_5550
mRNA
_5551
mRNA
_5552
mRNA
_5553
mRNA
_5554
13918
13919
13920
13921
13922
facs on lipid accumulation
Sorted High BODIPY Gate
-2.0
-0.4
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
-0.5
-1.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.8
+0.0
-0.1
N.D.
N.D.
growth on ypd
YPD
-2.5
-0.2
+0.8
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.2
-1.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-1.0
-0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.0
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
-0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.2
-1.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
-0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.0
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.1
+1.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.9
+0.2
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.8
-0.2
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.9
+0.1
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.3
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+1.9
N.D.
N.D.
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