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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13919 and 13920 are separated by 872 nucleotides
13920 and 13921 are separated by 201 nucleotides
13921 and 13922 are separated by 602 nucleotides
13922 and 13923 are separated by 199 nucleotides
mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356,341 to 358,990
13919
mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359,863 to 362,993
13920
mRNA_5553: 13921 - K20791 NAA10_11, ARD1_2 N-alpha-acetyltransferase 10/11, at 363,195 to 364,083
13921
mRNA_5554: 13922 - KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily, at 364,686 to 369,253
13922
mRNA_5555: 13923 - K19984 EXOC5, SEC10 exocyst complex component 5, at 369,453 to 373,843
13923
Group
Condition
mRNA
_5551
mRNA
_5552
mRNA
_5553
mRNA
_5554
mRNA
_5555
13919
13920
13921
13922
13923
auxotrophy
Dropout Complete
+0.2
-1.6
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose
+0.2
-0.9
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.9
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.8
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.5
N.D.
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-1.4
N.D.
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
N.D.
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.9
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.7
N.D.
N.D.
+1.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+1.3
N.D.
N.D.
-1.2
growth on oleic acid
YNB Glucose
-0.0
-0.4
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
N.D.
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
N.D.
N.D.
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.7
N.D.
N.D.
+1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+1.9
N.D.
N.D.
-0.8
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
N.D.
N.D.
+0.9
growth on ypd
YPD
-0.2
+0.8
N.D.
N.D.
+0.6
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