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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13926 and 13927 are separated by 86 nucleotides
13927 and 13928 are separated by 80 nucleotides
13928 and 13929 are separated by 689 nucleotides
13929 and 13930 are separated by 200 nucleotides
mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376,866 to 377,685
13926
mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377,772 to 380,881
13927
mRNA_5560: 13928 - BLAST PROTEIN D2013.6 [Ceraceosorus bombacis], at 380,962 to 381,944
13928
mRNA_5561: 13929 - Hypothetical Protein, at 382,634 to 383,572
13929
mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383,773 to 385,239
13930
Group
Condition
mRNA
_5558
mRNA
_5559
mRNA
_5560
mRNA
_5561
mRNA
_5562
13926
13927
13928
13929
13930
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-3.0
-2.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
-1.5
-0.1
-0.1
growth on ypd
YPD
-0.3
N.D.
-0.8
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
+0.3
-1.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.9
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.2
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
+0.1
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.5
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.6
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.4
-0.1
-0.2
auxotrophy
YNB Glucose
-0.4
N.D.
+0.4
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.2
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
-0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.0
-0.6
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.4
-0.2
+0.3
auxotrophy
Dropout Complete
-0.2
N.D.
+0.6
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
+0.8
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.4
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+1.0
+0.1
-0.4
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