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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13928 and 13929 are separated by 689 nucleotides
13929 and 13930 are separated by 200 nucleotides
13930 and 13931 are separated by 384 nucleotides
13931 and 13932 are separated by 101 nucleotides
mRNA_5560: 13928 - BLAST PROTEIN D2013.6 [Ceraceosorus bombacis], at 380,962 to 381,944
13928
mRNA_5561: 13929 - Hypothetical Protein, at 382,634 to 383,572
13929
mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383,773 to 385,239
13930
mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371
13931
mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387,473 to 390,458
13932
Group
Condition
mRNA
_5560
mRNA
_5561
mRNA
_5562
mRNA
_5563
mRNA
_5564
13928
13929
13930
13931
13932
ypd buoyancy
40 hrs No Buoyancy Separation
-3.0
-2.2
-0.8
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.4
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
-0.1
-0.1
N.D.
+0.2
growth on ypd
YPD
-0.8
-0.1
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.1
-0.2
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.6
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.0
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.6
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.5
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
-0.2
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
+0.3
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.0
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.4
-0.4
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.4
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
-0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.6
-0.3
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.1
-0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.1
-0.4
N.D.
-0.0
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