Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13930 and 13931 are separated by 384 nucleotides13931 and 13932 are separated by 101 nucleotides13932 and 13933 are separated by 1200 nucleotides13933 and 13934 are separated by 335 nucleotides mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383,773 to 385,239 13930 mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371 13931 mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387,473 to 390,458 13932 mRNA_5565: 13933 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 391,659 to 392,676 13933 mRNA_5566: 13934 - Hypothetical Protein, at 393,012 to 395,471 13934
Group Condition mRNA_5562 mRNA_5563 mRNA_5564 mRNA_5565 mRNA_5566
13930 13931 13932 13933 13934
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.2 -0.4 -0.5
auxotrophy YNB Glucose -0.2 N.D. -0.1 -0.0 -0.4
growth on ypd YPD -0.1 N.D. +0.1 -0.5 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 N.D. -0.3 +0.1 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.8 N.D. -0.5 -0.1 +0.7
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. -0.1 -0.3 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 N.D. -0.0 +0.1 -0.1
auxotrophy Dropout Complete -0.2 N.D. -0.2 +0.3 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 N.D. +0.0 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 N.D. +0.4 -0.1 -0.5
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. -0.1 +0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. -0.0 -0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 N.D. -0.0 +0.2 -0.2
growth on ricinoleic acid YNB Glucose -0.0 N.D. +0.0 -0.2 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 N.D. -0.1 -0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. -0.0 -0.1 -0.0
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.1 +0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. +0.2 -0.1 -0.3
growth on oleic acid YNB Oleic Acid +0.3 N.D. -0.0 -0.1 -0.2
growth on oleic acid YNB Glucose +0.1 N.D. -0.1 +0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. +0.2 -0.3 +0.3
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