Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13931 and 13932 are separated by 101 nucleotides13932 and 13933 are separated by 1200 nucleotides13933 and 13934 are separated by 335 nucleotides13934 and 13935 are separated by 127 nucleotides mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371 13931 mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387,473 to 390,458 13932 mRNA_5565: 13933 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 391,659 to 392,676 13933 mRNA_5566: 13934 - Hypothetical Protein, at 393,012 to 395,471 13934 mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395,599 to 396,422 13935
Group Condition mRNA_5563 mRNA_5564 mRNA_5565 mRNA_5566 mRNA_5567
13931 13932 13933 13934 13935
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.2 -0.4 -0.5 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.3 +0.1 -0.4 -0.4
auxotrophy YNB Glucose N.D. -0.1 -0.0 -0.4 -0.3
growth on ypd YPD N.D. +0.1 -0.5 -0.3 -0.2
auxotrophy Dropout Complete N.D. -0.2 +0.3 -0.5 -0.4
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.1 -0.3 -0.2 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.0 -0.2 -0.4 -0.2
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 +0.1 -0.3 -0.4
growth on ricinoleic acid YNB Glucose N.D. +0.0 -0.2 -0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine N.D. -0.1 +0.1 -0.1 -0.3
growth on oleic acid YNB Oleic Acid N.D. -0.0 -0.1 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.4 -0.1 -0.5 -0.2
ypd buoyancy 40 hrs High Buoyancy N.D. -0.1 -0.1 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.0 +0.2 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.0 +0.1 -0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate N.D. +0.2 -0.1 -0.3 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.5 -0.1 +0.7 -0.3
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.0 -0.1 -0.0 +0.1
growth on oleic acid YNB Glucose N.D. -0.1 +0.1 -0.0 +0.0
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.0 -0.2 -0.0 +0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.2 -0.3 +0.3 +0.6
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