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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13931 and 13932 are separated by 101 nucleotides
13932 and 13933 are separated by 1200 nucleotides
13933 and 13934 are separated by 335 nucleotides
13934 and 13935 are separated by 127 nucleotides
mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371
13931
mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387,473 to 390,458
13932
mRNA_5565: 13933 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 391,659 to 392,676
13933
mRNA_5566: 13934 - Hypothetical Protein, at 393,012 to 395,471
13934
mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395,599 to 396,422
13935
Group
Condition
mRNA
_5563
mRNA
_5564
mRNA
_5565
mRNA
_5566
mRNA
_5567
13931
13932
13933
13934
13935
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.4
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
-0.4
-0.4
auxotrophy
YNB Glucose
N.D.
-0.1
-0.0
-0.4
-0.3
growth on ypd
YPD
N.D.
+0.1
-0.5
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
-0.5
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.2
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.1
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.1
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.1
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.2
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
-0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.1
+0.7
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
-0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-0.2
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.3
+0.3
+0.6
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