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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13934 and 13935 are separated by 127 nucleotides
13935 and 13936 are separated by 341 nucleotides
13936 and 13937 are separated by 503 nucleotides
13937 and 13938 are separated by 559 nucleotides
mRNA_5566: 13934 - Hypothetical Protein, at 393,012 to 395,471
13934
mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395,599 to 396,422
13935
mRNA_5568: 13936 - Hypothetical Protein, at 396,764 to 397,075
13936
mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397,579 to 399,010
13937
mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399,570 to 402,274
13938
Group
Condition
mRNA
_5566
mRNA
_5567
mRNA
_5568
mRNA
_5569
mRNA
_5570
13934
13935
13936
13937
13938
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.0
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
N.D.
-0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
N.D.
+0.1
-0.5
auxotrophy
Dropout Complete
-0.5
-0.4
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
N.D.
-0.0
-0.1
growth on ypd
YPD
-0.3
-0.2
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.4
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose
-0.4
-0.3
N.D.
+0.2
+0.3
growth on oleic acid
YNB Glucose
-0.0
+0.0
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
N.D.
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.4
N.D.
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
N.D.
+0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.6
N.D.
+0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
+0.0
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.3
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.3
N.D.
+0.1
+0.5
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