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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13935 and 13936 are separated by 341 nucleotides
13936 and 13937 are separated by 503 nucleotides
13937 and 13938 are separated by 559 nucleotides
13938 and 13939 are separated by 206 nucleotides
mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395,599 to 396,422
13935
mRNA_5568: 13936 - Hypothetical Protein, at 396,764 to 397,075
13936
mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397,579 to 399,010
13937
mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399,570 to 402,274
13938
mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402,481 to 405,282
13939
Group
Condition
mRNA
_5567
mRNA
_5568
mRNA
_5569
mRNA
_5570
mRNA
_5571
13935
13936
13937
13938
13939
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
+0.5
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
+0.0
-0.5
-1.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.1
-0.5
-0.3
auxotrophy
Dropout Complete
-0.4
N.D.
+0.0
+0.1
-0.6
growth on ypd
YPD
-0.2
N.D.
+0.1
-0.2
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.4
-0.3
+0.1
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.1
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.6
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.0
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose
-0.3
N.D.
+0.2
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.2
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.2
+0.2
+0.5
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.0
+0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.4
+0.2
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.0
+1.0
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.4
+0.4
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.3
+0.7
+1.4
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