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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13938 and 13939 are separated by 206 nucleotides
13939 and 13940 are separated by 397 nucleotides
13940 and 13941 are separated by 367 nucleotides
13941 and 13942 are separated by 1911 nucleotides
mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399,570 to 402,274
13938
mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402,481 to 405,282
13939
mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565
13940
mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114
13941
mRNA_5574: 13942 - K02956 RP-S15, MRPS15, rpsO small subunit ribosomal protein S15, at 413,026 to 414,164
13942
Group
Condition
mRNA
_5570
mRNA
_5571
mRNA
_5572
mRNA
_5573
mRNA
_5574
13938
13939
13940
13941
13942
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-1.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-1.9
-0.1
+0.2
N.D.
growth on ypd
YPD
-0.2
-0.6
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-0.4
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.2
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.2
-0.2
N.D.
auxotrophy
Dropout Complete
+0.1
-0.6
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.1
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
-0.3
+0.5
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.7
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose
+0.3
-0.2
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.4
-0.5
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.8
-1.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.9
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
+0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.9
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+1.4
-0.1
-0.1
N.D.
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