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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13941 and 13942 are separated by 1911 nucleotides
13942 and 13943 are separated by 148 nucleotides
13943 and 13944 are separated by 381 nucleotides
13944 and 13945 are separated by 616 nucleotides
mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114
13941
mRNA_5574: 13942 - K02956 RP-S15, MRPS15, rpsO small subunit ribosomal protein S15, at 413,026 to 414,164
13942
mRNA_5575: 13943 - K12873 BUD31, G10 bud site selection protein 31, at 414,313 to 415,303
13943
mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415,685 to 417,537
13944
mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235
13945
Group
Condition
mRNA
_5573
mRNA
_5574
mRNA
_5575
mRNA
_5576
mRNA
_5577
13941
13942
13943
13944
13945
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
N.D.
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
-0.5
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
N.D.
-0.2
+0.2
growth on ypd
YPD
-0.2
N.D.
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose
+0.1
N.D.
N.D.
-0.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
N.D.
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.5
N.D.
N.D.
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.5
+0.5
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
N.D.
-0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.5
-0.1
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