Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13945 and 13946 are separated by 396 nucleotides13946 and 13947 are separated by 1210 nucleotides13947 and 13948 are separated by 791 nucleotides13948 and 13949 are separated by 760 nucleotides mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419,632 to 421,061 13946 mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422,272 to 423,518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424,310 to 425,729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426,490 to 430,753 13949
Group Condition mRNA_5577 mRNA_5578 mRNA_5579 mRNA_5580 mRNA_5581
13945 13946 13947 13948 13949
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. -0.5 N.D. -0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 N.D. +0.0 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.3 N.D. -0.1 N.D. -0.5
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. -0.2 N.D. +0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. -0.2 N.D. +0.2
auxotrophy Dropout Complete +0.3 N.D. -0.7 N.D. +0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. +0.7 N.D. -0.5
auxotrophy YNB Glucose +0.2 N.D. -0.7 N.D. +0.5
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -0.3 N.D. +0.3
growth on oleic acid YNB Oleic Acid +0.1 N.D. +0.3 N.D. -0.1
growth on ricinoleic acid YNB Glucose +0.5 N.D. -0.1 N.D. +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. +0.3 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 N.D. +0.6 N.D. +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 N.D. +0.4 N.D. -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 N.D. -0.2 N.D. +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 N.D. +0.3 N.D. +0.3
growth on oleic acid YNB Glucose +0.5 N.D. +0.5 N.D. -0.2
auxotrophy YNB Glucose 75mM Methionine +0.4 N.D. -0.4 N.D. +0.8
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 N.D. +0.5 N.D. -0.1
growth on ypd YPD -0.1 N.D. +0.5 N.D. +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 N.D. +0.5 N.D. +0.1
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