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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13949 and 13950 are separated by 366 nucleotides
13950 and 13951 are separated by 448 nucleotides
13951 and 13952 are separated by 117 nucleotides
13952 and 13953 are separated by 769 nucleotides
mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426,490 to 430,753
13949
mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431,120 to 432,974
13950
mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660
13951
mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176
13952
mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812
13953
Group
Condition
mRNA
_5581
mRNA
_5582
mRNA
_5583
mRNA
_5584
mRNA
_5585
13949
13950
13951
13952
13953
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.5
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.7
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
N.D.
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
N.D.
N.D.
+0.0
auxotrophy
Dropout Complete
+0.4
-0.0
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
+0.5
+0.1
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
N.D.
N.D.
+0.4
growth on ypd
YPD
+0.5
+0.3
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.5
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.1
N.D.
N.D.
+0.2
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