Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 13950 and 13951 are separated by 448 nucleotides13951 and 13952 are separated by 117 nucleotides13952 and 13953 are separated by 769 nucleotides13953 and 13954 are separated by 1032 nucleotides mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431,120 to 432,974 13950 mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660 13951 mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953 mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440,845 to 442,225 13954
Group Condition mRNA_5582 mRNA_5583 mRNA_5584 mRNA_5585 mRNA_5586
13950 13951 13952 13953 13954
facs on lipid accumulation Sorted No BODIPY Gate -0.5 N.D. N.D. -0.5 +0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.7 N.D. N.D. -0.2 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 N.D. N.D. -0.5 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 N.D. N.D. -0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. N.D. -0.2 -0.0
auxotrophy YNB Glucose +0.1 N.D. N.D. -0.1 -0.2
growth on oleic acid YNB Oleic Acid -0.5 N.D. N.D. +0.2 +0.0
auxotrophy Dropout Complete -0.0 N.D. N.D. -0.0 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 N.D. N.D. -0.3 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 N.D. N.D. +0.2 -0.4
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. N.D. -0.1 +0.1
growth on oleic acid YNB Glucose -0.1 N.D. N.D. +0.3 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. N.D. +0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. N.D. +0.1 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.2 N.D. N.D. -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 N.D. N.D. +0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 N.D. N.D. +0.0 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 N.D. N.D. +0.4 -0.2
growth on ypd YPD +0.3 N.D. N.D. +0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 N.D. N.D. +0.1 +0.4
growth on ricinoleic acid YNB Glucose +0.5 N.D. N.D. +0.5 -0.2
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