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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13951 and 13952 are separated by 117 nucleotides
13952 and 13953 are separated by 769 nucleotides
13953 and 13954 are separated by 1032 nucleotides
13954 and 13955 are separated by 234 nucleotides
mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660
13951
mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176
13952
mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812
13953
mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440,845 to 442,225
13954
mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442,460 to 444,934
13955
Group
Condition
mRNA
_5583
mRNA
_5584
mRNA
_5585
mRNA
_5586
mRNA
_5587
13951
13952
13953
13954
13955
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
-0.4
-0.6
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.5
+0.0
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.4
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.1
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.4
+0.3
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