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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13957 and 13958 are separated by 116 nucleotides
13958 and 13959 are separated by 1071 nucleotides
13959 and 13960 are separated by 255 nucleotides
13960 and 13961 are separated by 63 nucleotides
mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452,647 to 453,380
13957
mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453,497 to 457,057
13958
mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458,129 to 461,343
13959
mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064
13960
mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463,128 to 464,888
13961
Group
Condition
mRNA
_5589
mRNA
_5590
mRNA
_5591
mRNA
_5592
mRNA
_5593
13957
13958
13959
13960
13961
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
-0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.1
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
-0.0
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.4
+0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.1
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.1
+0.0
-0.1
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.1
-0.7
+0.1
auxotrophy
YNB Glucose
+0.5
N.D.
+0.0
-0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.3
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.1
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
+0.2
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.9
N.D.
-0.0
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.5
N.D.
-0.1
-0.0
+0.2
auxotrophy
Dropout Complete
+0.7
N.D.
+0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.2
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
N.D.
+0.4
-0.2
-0.3
growth on ypd
YPD
+0.1
N.D.
+0.2
+0.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
+0.7
+0.1
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