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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13959 and 13960 are separated by 255 nucleotides
13960 and 13961 are separated by 63 nucleotides
13961 and 13962 are separated by 261 nucleotides
13962 and 13963 are separated by 273 nucleotides
mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458,129 to 461,343
13959
mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064
13960
mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463,128 to 464,888
13961
mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465,150 to 466,141
13962
mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466,415 to 467,468
13963
Group
Condition
mRNA
_5591
mRNA
_5592
mRNA
_5593
mRNA
_5594
mRNA
_5595
13959
13960
13961
13962
13963
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.3
-1.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.4
-0.3
-1.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.4
+0.0
-0.6
N.D.
auxotrophy
YNB Glucose
+0.0
-0.5
-0.0
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.0
-0.6
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.7
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+0.1
-1.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.1
-0.5
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
-0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
-0.0
+0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.7
+0.1
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.8
-0.1
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.6
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.3
+0.1
N.D.
growth on ypd
YPD
+0.2
+0.5
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.5
+0.0
+1.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
+1.0
N.D.
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