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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13961 and 13962 are separated by 261 nucleotides
13962 and 13963 are separated by 273 nucleotides
13963 and 13964 are separated by 1572 nucleotides
13964 and 13965 are separated by 878 nucleotides
mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463,128 to 464,888
13961
mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465,150 to 466,141
13962
mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466,415 to 467,468
13963
mRNA_5596: 13964 - KOG2806 Chitinase, at 469,041 to 471,762
13964
mRNA_5597: 13965 - Hypothetical Protein, at 472,641 to 473,822
13965
Group
Condition
mRNA
_5593
mRNA
_5594
mRNA
_5595
mRNA
_5596
mRNA
_5597
13961
13962
13963
13964
13965
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.1
N.D.
-0.7
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.3
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.6
N.D.
-0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.2
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.6
N.D.
-0.1
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.2
N.D.
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.8
N.D.
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
N.D.
+0.1
-0.3
auxotrophy
Dropout Complete
-0.0
-0.3
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose
-0.0
-0.4
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.6
N.D.
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+1.0
N.D.
-0.6
-0.2
growth on ypd
YPD
+0.2
-0.1
N.D.
+0.7
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
N.D.
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
+0.3
+0.6
growth on ricinoleic acid
YNB Glucose
-0.1
+1.1
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+1.3
N.D.
+0.7
+0.1
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