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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13964 and 13965 are separated by 878 nucleotides
13965 and 13966 are separated by 505 nucleotides
13966 and 13967 are separated by 132 nucleotides
13967 and 13968 are separated by 646 nucleotides
mRNA_5596: 13964 - KOG2806 Chitinase, at 469,041 to 471,762
13964
mRNA_5597: 13965 - Hypothetical Protein, at 472,641 to 473,822
13965
mRNA_5598: 13966 - KOG0118 FOG RRM domain, at 474,328 to 475,458
13966
mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475,591 to 478,385
13967
mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479,032 to 480,783
13968
Group
Condition
mRNA
_5596
mRNA
_5597
mRNA
_5598
mRNA
_5599
mRNA
_5600
13964
13965
13966
13967
13968
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.2
N.D.
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.4
N.D.
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.5
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.5
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.2
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
N.D.
+0.0
+0.0
auxotrophy
Dropout Complete
+0.3
-0.5
N.D.
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.1
N.D.
+0.0
-0.2
growth on ypd
YPD
+0.7
-0.3
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose
+0.2
-0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.1
N.D.
+0.1
+0.2
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