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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13968 and 13969 are separated by 267 nucleotides
13969 and 13970 are separated by 628 nucleotides
13970 and 13971 are separated by 339 nucleotides
13971 and 13972 are separated by 366 nucleotides
mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479,032 to 480,783
13968
mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481,051 to 483,053
13969
mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483,682 to 484,493
13970
mRNA_5603: 13971 - K09523 DNAJC3 DnaJ homolog subfamily C member 3, at 484,833 to 486,890
13971
mRNA_5604: 13972 - Hypothetical Protein, at 487,257 to 489,515
13972
Group
Condition
mRNA
_5600
mRNA
_5601
mRNA
_5602
mRNA
_5603
mRNA
_5604
13968
13969
13970
13971
13972
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
N.D.
-1.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.6
N.D.
-0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+0.7
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
N.D.
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
+0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
N.D.
+1.0
-0.1
auxotrophy
Dropout Complete
+0.1
+0.3
N.D.
+0.6
-0.2
growth on ypd
YPD
-0.2
+0.5
N.D.
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.2
N.D.
+0.9
-0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+0.4
N.D.
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
+1.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.5
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
N.D.
+0.8
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
N.D.
+0.2
+0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
N.D.
+1.1
-0.2
auxotrophy
YNB Glucose
+0.2
+0.2
N.D.
+1.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
N.D.
+1.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.5
N.D.
+1.5
-0.3
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