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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13971 and 13972 are separated by 366 nucleotides
13972 and 13973 are separated by 411 nucleotides
13973 and 13974 are separated by 159 nucleotides
13974 and 13975 are separated by 503 nucleotides
mRNA_5603: 13971 - K09523 DNAJC3 DnaJ homolog subfamily C member 3, at 484,833 to 486,890
13971
mRNA_5604: 13972 - Hypothetical Protein, at 487,257 to 489,515
13972
mRNA_5605: 13973 - Hypothetical Protein, at 489,927 to 490,531
13973
mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139
13974
mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492,643 to 493,643
13975
Group
Condition
mRNA
_5603
mRNA
_5604
mRNA
_5605
mRNA
_5606
mRNA
_5607
13971
13972
13973
13974
13975
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.0
N.D.
+0.9
-1.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
N.D.
+0.5
-2.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
N.D.
+0.9
-1.6
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
N.D.
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.1
N.D.
+0.2
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.3
N.D.
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+1.1
-0.2
N.D.
+0.3
-1.3
auxotrophy
Dropout Complete
+0.6
-0.2
N.D.
+0.1
-0.5
growth on oleic acid
YNB Glucose
+0.9
-0.2
N.D.
+0.3
-0.9
growth on oleic acid
YNB Oleic Acid
+1.0
-0.2
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose
+1.2
-0.2
N.D.
+0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.3
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-0.1
N.D.
+0.7
-0.9
growth on ypd
YPD
+0.3
+0.2
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.0
N.D.
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.4
N.D.
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.5
-0.3
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.9
N.D.
+0.4
+0.6
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