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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13973 and 13974 are separated by 159 nucleotides
13974 and 13975 are separated by 503 nucleotides
13975 and 13976 are separated by 1241 nucleotides
13976 and 13977 are separated by 369 nucleotides
mRNA_5605: 13973 - Hypothetical Protein, at 489,927 to 490,531
13973
mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139
13974
mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492,643 to 493,643
13975
mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857
13976
mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581
13977
Group
Condition
mRNA
_5605
mRNA
_5606
mRNA
_5607
mRNA
_5608
mRNA
_5609
13973
13974
13975
13976
13977
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-1.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-1.3
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
-0.8
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-1.2
+0.5
-0.2
auxotrophy
YNB Glucose
N.D.
+0.1
-0.8
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.9
-1.6
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.9
-1.5
-0.1
+0.2
auxotrophy
Dropout Complete
N.D.
+0.1
-0.5
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-2.1
+1.1
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.4
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.4
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.9
+0.6
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
-0.1
+0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.3
+0.7
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.3
+0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.7
-0.9
+0.8
+0.2
growth on ypd
YPD
N.D.
+0.2
-0.1
+0.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.6
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.3
+0.8
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
+0.1
+0.3
+0.5
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