Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13973 and 13974 are separated by 159 nucleotides13974 and 13975 are separated by 503 nucleotides13975 and 13976 are separated by 1241 nucleotides13976 and 13977 are separated by 369 nucleotides mRNA_5605: 13973 - Hypothetical Protein, at 489,927 to 490,531 13973 mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139 13974 mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492,643 to 493,643 13975 mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581 13977
Group Condition mRNA_5605 mRNA_5606 mRNA_5607 mRNA_5608 mRNA_5609
13973 13974 13975 13976 13977
ypd buoyancy 40 hrs High Buoyancy N.D. -0.3 -1.1 -0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine N.D. +0.3 -1.3 +0.0 +0.0
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.1 +0.1 -0.8 +0.0
auxotrophy YNB Glucose 75mM Methionine N.D. +0.2 -1.2 +0.5 -0.2
auxotrophy YNB Glucose N.D. +0.1 -0.8 +0.3 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. +0.9 -1.6 -0.2 +0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.9 -1.5 -0.1 +0.2
auxotrophy Dropout Complete N.D. +0.1 -0.5 +0.3 -0.2
facs on lipid accumulation Sorted No BODIPY Gate N.D. +0.5 -2.1 +1.1 +0.4
growth on ricinoleic acid YNB Glucose N.D. +0.1 -0.4 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.2 -0.1 -0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.2 +0.2 -0.4 -0.0
growth on oleic acid YNB Glucose N.D. +0.3 -0.9 +0.6 +0.1
growth on oleic acid YNB Oleic Acid N.D. -0.5 -0.1 +0.6 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.3 -0.3 +0.7 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.1 -0.3 +0.3 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate N.D. +0.7 -0.9 +0.8 +0.2
growth on ypd YPD N.D. +0.2 -0.1 +0.4 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.4 +0.6 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.4 -0.3 +0.8 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +0.7 +0.1 +0.3 +0.5
remove
mRNA_5605
plot
remove
mRNA_5606
plot
remove
mRNA_5607
remove
mRNA_5608
plot
remove
mRNA_5609
plot