Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13974 and 13975 are separated by 503 nucleotides
13975 and 13976 are separated by 1241 nucleotides
13976 and 13977 are separated by 369 nucleotides
13977 and 13978 are separated by 88 nucleotides
mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139
13974
mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492,643 to 493,643
13975
mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857
13976
mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581
13977
mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396
13978
Group
Condition
mRNA
_5606
mRNA
_5607
mRNA
_5608
mRNA
_5609
mRNA
_5610
13974
13975
13976
13977
13978
ypd buoyancy
40 hrs High Buoyancy
-0.3
-1.1
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.8
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-1.3
+0.0
+0.0
+0.2
auxotrophy
YNB Glucose
+0.1
-0.8
+0.3
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-1.2
+0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-1.6
-0.2
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
-1.5
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.4
-0.0
-0.2
auxotrophy
Dropout Complete
+0.1
-0.5
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-2.1
+1.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
+0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.3
-0.9
+0.6
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
+0.7
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
+0.6
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
+0.3
+0.3
+0.2
growth on ypd
YPD
+0.2
-0.1
+0.4
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.9
+0.8
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.6
+0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.3
+0.8
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.1
+0.3
+0.5
+0.0
remove
mRNA_5606
plot
remove
mRNA_5607
plot
remove
mRNA_5608
remove
mRNA_5609
plot
remove
mRNA_5610
plot