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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13976 and 13977 are separated by 369 nucleotides
13977 and 13978 are separated by 88 nucleotides
13978 and 13979 are separated by 266 nucleotides
13979 and 13980 are separated by 149 nucleotides
mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857
13976
mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581
13977
mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396
13978
mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497
13979
mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391
13980
Group
Condition
mRNA
_5608
mRNA
_5609
mRNA
_5610
mRNA
_5611
mRNA
_5612
13976
13977
13978
13979
13980
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.0
-0.2
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.0
-0.2
+0.4
+0.3
auxotrophy
YNB Glucose
+0.3
-0.3
-0.2
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.3
+0.2
-0.1
auxotrophy
Dropout Complete
+0.3
-0.2
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.1
+0.8
-0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
+0.1
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.2
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.0
+0.6
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.2
+0.2
-0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.2
+0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
+0.2
+0.6
+0.3
growth on oleic acid
YNB Glucose
+0.6
+0.1
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.0
+0.1
-0.5
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
+0.2
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
+0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.4
+0.1
-0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+0.2
+0.3
+0.6
growth on ypd
YPD
+0.4
+0.3
-0.0
+1.5
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.1
+1.5
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+1.1
+0.4
+0.2
+0.7
+0.5
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