Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13976 and 13977 are separated by 369 nucleotides13977 and 13978 are separated by 88 nucleotides13978 and 13979 are separated by 266 nucleotides13979 and 13980 are separated by 149 nucleotides mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497 13979 mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391 13980
Group Condition mRNA_5608 mRNA_5609 mRNA_5610 mRNA_5611 mRNA_5612
13976 13977 13978 13979 13980
ypd buoyancy 40 hrs Low Buoyancy -0.8 +0.0 -0.2 +0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.4 -0.0 -0.2 +0.4 +0.3
auxotrophy YNB Glucose +0.3 -0.3 -0.2 +0.0 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.1 +0.3 +0.2 -0.1
auxotrophy Dropout Complete +0.3 -0.2 +0.1 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.3 +0.1 +0.8 -0.7
auxotrophy YNB Glucose 75mM Methionine +0.5 -0.2 +0.1 -0.3 +0.3
growth on ricinoleic acid YNB Glucose +0.2 +0.1 +0.2 -0.3 +0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.1 +0.0 +0.6 +0.1
growth on oleic acid YNB Oleic Acid +0.6 +0.2 +0.2 -0.4 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.8 +0.2 +0.2 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.1 +0.2 +0.6 +0.3
growth on oleic acid YNB Glucose +0.6 +0.1 +0.1 +0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.7 +0.0 +0.1 -0.5 +0.5
auxotrophy YNB Glucose 75mM Arginine +0.0 +0.0 +0.2 +0.3 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.5 +0.0 +0.3 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.8 +0.4 +0.1 -0.0 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.3 +0.2 +0.3 +0.6
growth on ypd YPD +0.4 +0.3 -0.0 +1.5 -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.2 +0.1 +1.5 +0.7
facs on lipid accumulation Sorted No BODIPY Gate +1.1 +0.4 +0.2 +0.7 +0.5
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