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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13977 and 13978 are separated by 88 nucleotides
13978 and 13979 are separated by 266 nucleotides
13979 and 13980 are separated by 149 nucleotides
13980 and 13981 are separated by 247 nucleotides
mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581
13977
mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396
13978
mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497
13979
mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391
13980
mRNA_5613: 13981 - K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5, at 512,639 to 514,652
13981
Group
Condition
mRNA
_5609
mRNA
_5610
mRNA
_5611
mRNA
_5612
mRNA
_5613
13977
13978
13979
13980
13981
auxotrophy
YNB Glucose
-0.3
-0.2
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.3
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.4
+0.0
N.D.
auxotrophy
Dropout Complete
-0.2
+0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
+0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.5
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.8
-0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.6
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
-0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.0
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.6
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.3
+0.6
N.D.
growth on ypd
YPD
+0.3
-0.0
+1.5
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
+0.7
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+1.5
+0.7
N.D.
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