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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13978 and 13979 are separated by 266 nucleotides
13979 and 13980 are separated by 149 nucleotides
13980 and 13981 are separated by 247 nucleotides
13981 and 13982 are separated by 758 nucleotides
mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396
13978
mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497
13979
mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391
13980
mRNA_5613: 13981 - K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5, at 512,639 to 514,652
13981
mRNA_5614: 13982 - BLAST Zinc finger protein DZIP1L [Rhizoctonia solani], at 515,411 to 519,507
13982
Group
Condition
mRNA
_5610
mRNA
_5611
mRNA
_5612
mRNA
_5613
mRNA
_5614
13978
13979
13980
13981
13982
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose
-0.2
+0.0
+0.2
N.D.
-0.4
auxotrophy
Dropout Complete
+0.1
-0.1
+0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
+0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.8
-0.7
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
+0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.4
-0.1
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.3
N.D.
+0.5
growth on ypd
YPD
-0.0
+1.5
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.7
+0.5
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.6
+0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
+0.6
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+1.5
+0.7
N.D.
+0.4
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