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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13980 and 13981 are separated by 247 nucleotides
13981 and 13982 are separated by 758 nucleotides
13982 and 13983 are separated by 436 nucleotides
13983 and 13984 are separated by 550 nucleotides
mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391
13980
mRNA_5613: 13981 - K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5, at 512,639 to 514,652
13981
mRNA_5614: 13982 - BLAST Zinc finger protein DZIP1L [Rhizoctonia solani], at 515,411 to 519,507
13982
mRNA_5615: 13983 - HMMPfam-GRF zinc finger-PF06839, at 519,944 to 520,866
13983
mRNA_5616: 13984 - HMMPfam-GRF zinc finger-PF06839, at 521,417 to 522,202
13984
Group
Condition
mRNA
_5612
mRNA
_5613
mRNA
_5614
mRNA
_5615
mRNA
_5616
13980
13981
13982
13983
13984
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
+0.6
-2.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.2
-0.1
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.1
-0.5
-1.2
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.1
-0.3
-1.0
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
+0.2
-0.2
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.3
-0.6
-0.9
growth on ypd
YPD
-0.5
N.D.
+0.1
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.2
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.0
+1.0
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
N.D.
+0.4
+0.3
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
N.D.
-0.2
+0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.5
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.6
+0.0
+0.3
auxotrophy
YNB Glucose
+0.2
N.D.
-0.4
+0.0
+0.9
auxotrophy
Dropout Complete
+0.1
N.D.
-0.3
-0.0
+1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.1
-0.3
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.5
-0.2
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.1
-0.1
+1.8
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