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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13984 and 13985 are separated by 383 nucleotides
13985 and 13986 are separated by 539 nucleotides
13986 and 13987 are separated by 341 nucleotides
13987 and 13988 are separated by 297 nucleotides
mRNA_5616: 13984 - HMMPfam-GRF zinc finger-PF06839, at 521,417 to 522,202
13984
mRNA_5617: 13985 - BLAST beta-flanking protein [Kwoniella dejecticola CBS ..., at 522,586 to 523,883
13985
mRNA_5618: 13986 - K09866 AQP4 aquaporin-4, at 524,423 to 526,190
13986
mRNA_5619: 13987 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 526,532 to 528,365
13987
mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528,663 to 529,956
13988
Group
Condition
mRNA
_5616
mRNA
_5617
mRNA
_5618
mRNA
_5619
mRNA
_5620
13984
13985
13986
13987
13988
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.1
+0.3
-0.7
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.4
+0.6
-0.4
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
-0.1
-0.4
-1.0
+0.7
growth on ricinoleic acid
YNB Glucose
-1.2
+0.6
+0.5
+0.1
-0.8
growth on oleic acid
YNB Oleic Acid
-1.0
+0.3
+0.3
+0.3
-0.6
auxotrophy
Dropout Complete
+1.1
-0.0
+0.0
-0.0
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.2
-0.7
-0.8
+2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.1
-0.2
-0.4
growth on oleic acid
YNB Glucose
-0.9
+0.2
+0.3
+0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
-0.8
-1.2
+2.1
auxotrophy
YNB Glucose
+0.9
+0.5
+0.1
-0.2
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
+1.0
+0.4
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.5
-0.3
+0.5
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.1
+0.1
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.1
+0.3
+0.1
+0.9
growth on ypd
YPD
-0.4
-0.4
+0.4
+1.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
+0.2
+0.1
+1.9
auxotrophy
YNB Glucose 75mM Methionine
+1.8
+0.2
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
+0.2
+0.1
+1.9
ypd buoyancy
40 hrs Median Buoyancy
+0.8
-0.2
+0.5
+0.5
+1.5
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