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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13987 and 13988 are separated by 297 nucleotides
13988 and 13989 are separated by 380 nucleotides
13989 and 13990 are separated by 155 nucleotides
13990 and 13991 are separated by 217 nucleotides
mRNA_5619: 13987 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 526,532 to 528,365
13987
mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528,663 to 529,956
13988
mRNA_5621: 13989 - Hypothetical Protein, at 530,337 to 531,503
13989
mRNA_5622: 13990 - K00849 galK galactokinase, at 531,659 to 534,063
13990
mRNA_5623: 13991 - KOG3393 Predicted membrane protein, at 534,281 to 535,136
13991
Group
Condition
mRNA
_5619
mRNA
_5620
mRNA
_5621
mRNA
_5622
mRNA
_5623
13987
13988
13989
13990
13991
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-1.8
-1.5
+0.0
-0.0
auxotrophy
Dropout Complete
-0.0
-1.7
-0.3
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.7
-0.9
-0.1
-0.8
auxotrophy
YNB Glucose
-0.2
-1.5
-0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.8
-0.3
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
+0.1
-0.0
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
-0.9
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.8
+0.1
-0.4
+0.6
growth on oleic acid
YNB Oleic Acid
+0.3
-0.6
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
-0.3
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+2.1
-1.1
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.8
+0.3
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.9
-0.2
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+2.0
+0.6
+0.2
-1.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
+1.0
-0.7
-0.0
+0.0
growth on oleic acid
YNB Glucose
+0.5
-0.4
+0.6
+0.1
+0.1
growth on ypd
YPD
+1.6
-0.1
+0.1
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+1.9
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+1.5
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.9
+0.4
-0.1
-0.1
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