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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13989 and 13990 are separated by 155 nucleotides
13990 and 13991 are separated by 217 nucleotides
13991 and 13992 are separated by 616 nucleotides
13992 and 13993 are separated by 774 nucleotides
mRNA_5621: 13989 - Hypothetical Protein, at 530,337 to 531,503
13989
mRNA_5622: 13990 - K00849 galK galactokinase, at 531,659 to 534,063
13990
mRNA_5623: 13991 - KOG3393 Predicted membrane protein, at 534,281 to 535,136
13991
mRNA_5624: 13992 - KOG1611 Predicted short chain-type dehydrogenase, at 535,753 to 536,555
13992
mRNA_5625: 13993 - KOG1611 Predicted short chain-type dehydrogenase, at 537,330 to 538,157
13993
Group
Condition
mRNA
_5621
mRNA
_5622
mRNA
_5623
mRNA
_5624
mRNA
_5625
13989
13990
13991
13992
13993
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
+0.0
-0.0
-3.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.1
+0.2
-1.9
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.2
-1.3
-1.5
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.3
-2.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.6
-2.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.1
-0.8
+0.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.2
-0.3
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
-0.6
+0.8
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.7
+0.7
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
-0.2
+0.9
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.0
+0.0
+0.8
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.0
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.1
+0.6
+0.3
growth on ypd
YPD
+0.1
-0.2
+0.3
+0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.2
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.6
+0.1
+0.1
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
-0.3
+1.5
+0.2
auxotrophy
Dropout Complete
-0.3
+0.1
-0.3
+1.5
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
+0.1
+1.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
-0.1
+1.8
-0.4
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
+1.8
+0.6
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