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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13990 and 13991 are separated by 217 nucleotides
13991 and 13992 are separated by 616 nucleotides
13992 and 13993 are separated by 774 nucleotides
13993 and 13994 are separated by 647 nucleotides
mRNA_5622: 13990 - K00849 galK galactokinase, at 531,659 to 534,063
13990
mRNA_5623: 13991 - KOG3393 Predicted membrane protein, at 534,281 to 535,136
13991
mRNA_5624: 13992 - KOG1611 Predicted short chain-type dehydrogenase, at 535,753 to 536,555
13992
mRNA_5625: 13993 - KOG1611 Predicted short chain-type dehydrogenase, at 537,330 to 538,157
13993
mRNA_5626: 13994 - KOG1611 Predicted short chain-type dehydrogenase, at 538,805 to 539,634
13994
Group
Condition
mRNA
_5622
mRNA
_5623
mRNA
_5624
mRNA
_5625
mRNA
_5626
13990
13991
13992
13993
13994
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.0
-3.2
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.3
-1.5
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-2.3
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.6
-2.0
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-1.9
-0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.6
+0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.8
+0.8
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
+0.6
-0.1
+0.1
growth on ypd
YPD
-0.2
+0.3
+0.5
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.7
+0.7
-0.4
+1.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
+0.8
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.6
+0.8
-0.3
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.9
-0.4
+1.0
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.3
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+1.5
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+1.0
+0.2
+0.1
auxotrophy
Dropout Complete
+0.1
-0.3
+1.5
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+1.8
-0.4
+1.2
auxotrophy
YNB Glucose
+0.3
-0.3
+1.8
+0.6
+0.1
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