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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13992 and 13993 are separated by 774 nucleotides
13993 and 13994 are separated by 647 nucleotides
13994 and 13995 are separated by 94 nucleotides
13995 and 13996 are separated by 162 nucleotides
mRNA_5624: 13992 - KOG1611 Predicted short chain-type dehydrogenase, at 535,753 to 536,555
13992
mRNA_5625: 13993 - KOG1611 Predicted short chain-type dehydrogenase, at 537,330 to 538,157
13993
mRNA_5626: 13994 - KOG1611 Predicted short chain-type dehydrogenase, at 538,805 to 539,634
13994
mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539,729 to 541,360
13995
mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541,523 to 547,167
13996
Group
Condition
mRNA
_5624
mRNA
_5625
mRNA
_5626
mRNA
_5627
mRNA
_5628
13992
13993
13994
13995
13996
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.2
-0.4
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
+0.2
-0.4
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-2.3
+0.3
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
-0.3
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
-0.2
+0.5
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.6
+0.3
-0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
+0.2
N.D.
-0.0
growth on ypd
YPD
+0.5
+0.2
-0.0
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.1
+0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.0
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.0
+0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.4
+1.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.2
+0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.4
+1.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.5
+0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.3
+1.2
N.D.
+0.1
auxotrophy
Dropout Complete
+1.5
+0.6
+0.2
N.D.
-0.0
auxotrophy
YNB Glucose
+1.8
+0.6
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.8
-0.4
+1.2
N.D.
+0.2
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