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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13995 and 13996 are separated by 162 nucleotides
13996 and 13997 are separated by 368 nucleotides
13997 and 13998 are separated by 207 nucleotides
13998 and 13999 are separated by 428 nucleotides
mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539,729 to 541,360
13995
mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541,523 to 547,167
13996
mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547,536 to 549,644
13997
mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549,852 to 551,893
13998
mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552,322 to 556,680
13999
Group
Condition
mRNA
_5627
mRNA
_5628
mRNA
_5629
mRNA
_5630
mRNA
_5631
13995
13996
13997
13998
13999
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.1
-0.6
-0.1
auxotrophy
Dropout Complete
N.D.
-0.0
-0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.4
-0.5
+0.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
-0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.4
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.1
-0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.3
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.4
-0.1
growth on ypd
YPD
N.D.
+0.1
-0.2
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.0
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
+0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.0
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
+0.2
+0.2
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