Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13998 and 13999 are separated by 428 nucleotides
13999 and 14000 are separated by 388 nucleotides
14000 and 14001 are separated by 642 nucleotides
14001 and 14002 are separated by 322 nucleotides
mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549,852 to 551,893
13998
mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552,322 to 556,680
13999
mRNA_5632: 14000 - Hypothetical Protein, at 557,069 to 557,641
14000
mRNA_5633: 14001 - K01679 E4.2.1.2B, fumC fumarate hydratase, class II, at 558,284 to 560,290
14001
mRNA_5634: 14002 - K00750 GYG1, GYG2 glycogenin, at 560,613 to 563,450
14002
Group
Condition
mRNA
_5630
mRNA
_5631
mRNA
_5632
mRNA
_5633
mRNA
_5634
13998
13999
14000
14001
14002
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
+0.4
N.D.
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.2
+0.1
N.D.
-1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.1
N.D.
-1.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.0
N.D.
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
-0.1
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.0
-0.2
N.D.
-0.5
auxotrophy
YNB Glucose
-0.7
+0.2
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.4
+0.5
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
N.D.
+0.2
growth on ypd
YPD
+0.4
+0.1
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.3
+0.5
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.1
+0.4
N.D.
-0.3
remove
mRNA_5630
plot
remove
mRNA_5631
plot
remove
mRNA_5632
remove
mRNA_5633
plot
remove
mRNA_5634
plot