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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14002 and 14003 are separated by 595 nucleotides
14003 and 14004 are separated by 273 nucleotides
14004 and 14005 are separated by 290 nucleotides
14005 and 14006 are separated by 298 nucleotides
mRNA_5634: 14002 - K00750 GYG1, GYG2 glycogenin, at 560,613 to 563,450
14002
mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564,046 to 564,667
14003
mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564,941 to 566,584
14004
mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566,875 to 570,624
14005
mRNA_5638: 14006 - Hypothetical Protein, at 570,923 to 572,239
14006
Group
Condition
mRNA
_5634
mRNA
_5635
mRNA
_5636
mRNA
_5637
mRNA
_5638
14002
14003
14004
14005
14006
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
-0.9
-0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
N.D.
-1.0
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-1.3
N.D.
-0.3
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.9
+0.0
-0.2
growth on ypd
YPD
-0.3
N.D.
-0.4
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.8
N.D.
+0.0
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.5
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.6
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.5
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.6
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
-0.3
+0.2
auxotrophy
Dropout Complete
+0.1
N.D.
-0.3
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.3
+0.2
-0.1
auxotrophy
YNB Glucose
+0.2
N.D.
-0.5
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
+0.2
+0.2
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