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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14005 and 14006 are separated by 298 nucleotides
14006 and 14007 are separated by 217 nucleotides
14007 and 14008 are separated by 769 nucleotides
14008 and 14009 are separated by 161 nucleotides
mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566,875 to 570,624
14005
mRNA_5638: 14006 - Hypothetical Protein, at 570,923 to 572,239
14006
mRNA_5639: 14007 - SUPERFAMILY--SSF52047, at 572,457 to 573,872
14007
mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900
14008
mRNA_5641: 14009 - K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17, at 576,062 to 577,225
14009
Group
Condition
mRNA
_5637
mRNA
_5638
mRNA
_5639
mRNA
_5640
mRNA
_5641
14005
14006
14007
14008
14009
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.3
-1.8
N.D.
growth on ypd
YPD
-0.3
-0.3
-0.1
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-0.5
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.0
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose
+0.4
-0.1
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.2
+0.3
N.D.
auxotrophy
Dropout Complete
+0.3
-0.2
+0.3
+0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.5
+0.3
N.D.
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