Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14005 and 14006 are separated by 298 nucleotides14006 and 14007 are separated by 217 nucleotides14007 and 14008 are separated by 769 nucleotides14008 and 14009 are separated by 161 nucleotides mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566,875 to 570,624 14005 mRNA_5638: 14006 - Hypothetical Protein, at 570,923 to 572,239 14006 mRNA_5639: 14007 - SUPERFAMILY--SSF52047, at 572,457 to 573,872 14007 mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900 14008 mRNA_5641: 14009 - K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17, at 576,062 to 577,225 14009
Group Condition mRNA_5637 mRNA_5638 mRNA_5639 mRNA_5640 mRNA_5641
14005 14006 14007 14008 14009
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 +0.0 -0.3 -1.8 N.D.
growth on ypd YPD -0.3 -0.3 -0.1 -0.6 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.2 -0.5 -0.4 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.6 -0.2 -0.0 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.0 -0.1 -0.2 N.D.
growth on ricinoleic acid YNB Glucose -0.2 +0.2 -0.0 -0.4 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.2 -0.0 +0.2 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.4 -0.1 +0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.1 +0.2 -0.2 N.D.
growth on oleic acid YNB Oleic Acid -0.2 +0.0 +0.1 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.2 +0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.2 +0.1 +0.2 N.D.
auxotrophy YNB Glucose +0.4 -0.1 +0.2 -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.3 -0.0 +0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.2 +0.2 +0.3 N.D.
auxotrophy Dropout Complete +0.3 -0.2 +0.3 +0.0 N.D.
growth on oleic acid YNB Glucose -0.1 +0.1 +0.1 +0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.3 +0.1 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.2 -0.1 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.1 +0.3 +0.5 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.1 +0.5 +0.3 N.D.
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