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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14007 and 14008 are separated by 769 nucleotides
14008 and 14009 are separated by 161 nucleotides
14009 and 14010 are separated by 304 nucleotides
14010 and 14011 are separated by 306 nucleotides
mRNA_5639: 14007 - SUPERFAMILY--SSF52047, at 572,457 to 573,872
14007
mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900
14008
mRNA_5641: 14009 - K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17, at 576,062 to 577,225
14009
mRNA_5642: 14010 - Interpro Mitochondrial inner-membrane-bound regulator, at 577,530 to 579,606
14010
mRNA_5643: 14011 - BLAST Ras-related protein Rab-44 [Buceros rhinoceros silves..., at 579,913 to 580,872
14011
Group
Condition
mRNA
_5639
mRNA
_5640
mRNA
_5641
mRNA
_5642
mRNA
_5643
14007
14008
14009
14010
14011
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-1.8
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
N.D.
-1.7
+0.2
auxotrophy
YNB Glucose
+0.2
-0.3
N.D.
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-1.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
N.D.
+0.8
-0.4
auxotrophy
Dropout Complete
+0.3
+0.0
N.D.
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
N.D.
-0.5
+0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.5
N.D.
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
N.D.
-0.7
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
N.D.
+0.6
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
N.D.
+0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
N.D.
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
N.D.
+0.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
N.D.
+0.9
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
N.D.
+0.2
+0.5
growth on ypd
YPD
-0.1
-0.6
N.D.
+1.9
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
N.D.
+0.7
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.3
N.D.
+1.8
+0.2
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