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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14008 and 14009 are separated by 161 nucleotides
14009 and 14010 are separated by 304 nucleotides
14010 and 14011 are separated by 306 nucleotides
14011 and 14012 are separated by 2863 nucleotides
mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900
14008
mRNA_5641: 14009 - K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17, at 576,062 to 577,225
14009
mRNA_5642: 14010 - Interpro Mitochondrial inner-membrane-bound regulator, at 577,530 to 579,606
14010
mRNA_5643: 14011 - BLAST Ras-related protein Rab-44 [Buceros rhinoceros silves..., at 579,913 to 580,872
14011
mRNA_5644: 14012 - Hypothetical Protein, at 583,736 to 584,443
14012
Group
Condition
mRNA
_5640
mRNA
_5641
mRNA
_5642
mRNA
_5643
mRNA
_5644
14008
14009
14010
14011
14012
auxotrophy
YNB Glucose
-0.3
N.D.
-0.7
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-1.7
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
N.D.
-0.4
+0.1
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-1.1
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.4
+0.3
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.1
+0.3
-0.8
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.6
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
-0.7
+0.3
-0.3
auxotrophy
Dropout Complete
+0.0
N.D.
-0.4
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.3
+0.5
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.1
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.8
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.1
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.9
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.5
+0.9
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.6
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.8
+0.2
-0.0
growth on ypd
YPD
-0.6
N.D.
+1.9
+0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.2
+0.5
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.7
+0.1
+1.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
+1.8
+0.2
-0.1
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