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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14010 and 14011 are separated by 306 nucleotides
14011 and 14012 are separated by 2863 nucleotides
14012 and 14013 are separated by 269 nucleotides
14013 and 14014 are separated by 210 nucleotides
mRNA_5642: 14010 - Interpro Mitochondrial inner-membrane-bound regulator, at 577,530 to 579,606
14010
mRNA_5643: 14011 - BLAST Ras-related protein Rab-44 [Buceros rhinoceros silves..., at 579,913 to 580,872
14011
mRNA_5644: 14012 - Hypothetical Protein, at 583,736 to 584,443
14012
mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584,713 to 586,254
14013
mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586,465 to 587,964
14014
Group
Condition
mRNA
_5642
mRNA
_5643
mRNA
_5644
mRNA
_5645
mRNA
_5646
14010
14011
14012
14013
14014
auxotrophy
YNB Glucose
-0.7
+0.1
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-1.7
+0.2
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
-0.7
-0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
-0.7
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
-0.8
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.6
-0.1
-0.8
-0.2
-0.3
auxotrophy
Dropout Complete
-0.4
+0.0
+0.1
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
+0.3
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.3
-0.3
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.4
-0.8
-0.0
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
-0.2
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.3
-0.1
-0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.4
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.9
+0.1
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
+0.9
-0.2
+0.1
growth on ypd
YPD
+1.9
+0.0
-0.6
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
+0.4
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
+0.2
-0.0
+0.1
+0.1
growth on oleic acid
YNB Glucose
+1.8
+0.2
-0.1
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.1
+1.0
-0.0
+0.1
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