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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14011 and 14012 are separated by 2863 nucleotides
14012 and 14013 are separated by 269 nucleotides
14013 and 14014 are separated by 210 nucleotides
14014 and 14015 are separated by 514 nucleotides
mRNA_5643: 14011 - BLAST Ras-related protein Rab-44 [Buceros rhinoceros silves..., at 579,913 to 580,872
14011
mRNA_5644: 14012 - Hypothetical Protein, at 583,736 to 584,443
14012
mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584,713 to 586,254
14013
mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586,465 to 587,964
14014
mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588,479 to 592,654
14015
Group
Condition
mRNA
_5643
mRNA
_5644
mRNA
_5645
mRNA
_5646
mRNA
_5647
14011
14012
14013
14014
14015
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.7
-0.1
-0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.8
-0.0
-0.7
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.8
-0.2
-0.3
+0.2
growth on ypd
YPD
+0.0
-0.6
-0.1
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.7
-0.2
+0.1
-0.3
auxotrophy
YNB Glucose
+0.1
-0.2
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.8
-0.2
-0.1
+0.0
auxotrophy
Dropout Complete
+0.0
+0.1
-0.4
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
-0.0
-0.6
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-0.3
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.3
+0.0
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.1
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.4
-0.0
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.1
-0.2
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.9
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+1.0
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
+0.1
+0.1
+0.8
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