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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14014 and 14015 are separated by 514 nucleotides
14015 and 14016 are separated by 186 nucleotides
14016 and 14017 are separated by 688 nucleotides
14017 and 14018 are separated by 474 nucleotides
mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586,465 to 587,964
14014
mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588,479 to 592,654
14015
mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592,841 to 594,405
14016
mRNA_5649: 14017 - SUPERFAMILY--SSF52047, at 595,094 to 596,616
14017
mRNA_5650: 14018 - Hypothetical Protein, at 597,091 to 598,437
14018
Group
Condition
mRNA
_5646
mRNA
_5647
mRNA
_5648
mRNA
_5649
mRNA
_5650
14014
14015
14016
14017
14018
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.2
N.D.
-0.4
+0.0
auxotrophy
YNB Glucose
-0.2
-0.1
N.D.
+0.1
-0.8
growth on ricinoleic acid
YNB Glucose
-0.6
-0.2
N.D.
-0.2
-0.1
auxotrophy
Dropout Complete
-0.3
-0.3
N.D.
+0.3
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
N.D.
-0.2
+0.5
growth on ypd
YPD
-0.3
-0.1
N.D.
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.5
N.D.
-0.3
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
+0.5
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
-0.1
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.8
N.D.
+0.1
-0.1
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