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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14016 and 14017 are separated by 688 nucleotides
14017 and 14018 are separated by 474 nucleotides
14018 and 14019 are separated by 253 nucleotides
14019 and 14020 are separated by 2169 nucleotides
mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592,841 to 594,405
14016
mRNA_5649: 14017 - SUPERFAMILY--SSF52047, at 595,094 to 596,616
14017
mRNA_5650: 14018 - Hypothetical Protein, at 597,091 to 598,437
14018
mRNA_5651: 14019 - K13728 MAD2L2 mitotic spindle assembly checkpoint protein MAD2B, at 598,691 to 599,963
14019
mRNA_5652: 14020 - KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development, at 602,133 to 602,528
14020
Group
Condition
mRNA
_5648
mRNA
_5649
mRNA
_5650
mRNA
_5651
mRNA
_5652
14016
14017
14018
14019
14020
auxotrophy
YNB Glucose
N.D.
+0.1
-0.8
+0.1
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.1
-0.1
-1.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.2
+0.0
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.7
-0.6
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.3
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.5
-0.0
-0.9
auxotrophy
Dropout Complete
N.D.
+0.3
-0.8
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.4
+0.1
-1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.0
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.3
+0.1
-0.5
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
-0.1
+0.7
growth on ypd
YPD
N.D.
-0.4
+0.2
+0.7
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.1
+0.0
+1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.0
+1.2
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.5
+0.3
+1.7
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.1
+1.6
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
-0.0
+3.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.8
+0.2
+2.7
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