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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14020 and 14021 are separated by 921 nucleotides
14021 and 14022 are separated by 599 nucleotides
14022 and 14023 are separated by 216 nucleotides
14023 and 14024 are separated by 667 nucleotides
mRNA_5652: 14020 - KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development, at 602,133 to 602,528
14020
mRNA_5653: 14021 - Hypothetical Protein, at 603,450 to 604,586
14021
mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605,186 to 607,588
14022
mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607,805 to 615,263
14023
mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615,931 to 617,472
14024
Group
Condition
mRNA
_5652
mRNA
_5653
mRNA
_5654
mRNA
_5655
mRNA
_5656
14020
14021
14022
14023
14024
growth on oleic acid
YNB Oleic Acid
-1.0
-0.0
-3.5
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
-0.5
-4.6
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.7
-0.9
-4.3
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.7
+0.0
-0.5
N.D.
auxotrophy
YNB Glucose
-0.8
-0.5
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.1
+0.1
-0.9
N.D.
auxotrophy
Dropout Complete
-0.5
-0.4
-0.2
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.1
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.0
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.5
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.4
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+1.2
-0.5
-0.3
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.3
+0.0
+0.4
N.D.
growth on ypd
YPD
+0.3
-0.2
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.1
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.5
-0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.5
+0.2
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.6
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+2.7
+0.5
-0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+3.2
+1.4
+0.1
+0.2
N.D.
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