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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14022 and 14023 are separated by 216 nucleotides
14023 and 14024 are separated by 667 nucleotides
14024 and 14025 are separated by 168 nucleotides
14025 and 14026 are separated by 180 nucleotides
mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605,186 to 607,588
14022
mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607,805 to 615,263
14023
mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615,931 to 617,472
14024
mRNA_5657: 14025 - SUPERFAMILY--SSF52047, at 617,641 to 619,056
14025
mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619,237 to 620,685
14026
Group
Condition
mRNA
_5654
mRNA
_5655
mRNA
_5656
mRNA
_5657
mRNA
_5658
14022
14023
14024
14025
14026
growth on ricinoleic acid
YNB Methylricinoleic Acid
-4.6
-0.4
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-4.3
-0.7
N.D.
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
-3.5
-0.4
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
N.D.
-0.7
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.9
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
N.D.
-0.4
-0.0
auxotrophy
Dropout Complete
-0.2
-0.4
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
-0.1
-0.4
N.D.
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.2
N.D.
-0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.3
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.5
N.D.
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.0
+0.1
growth on ypd
YPD
+0.0
+0.1
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
N.D.
+0.3
+0.1
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